Bengaluru |3 Day Workshop in NGS Data Analysis DNA-Seq, RNA-Seq & Chip-Seq

Sep 10, 2018 10:00 AM - Sep 12, 2018 05:00 PM

BioDiscovery Group, 24th Main Road 1st Phase, JP Nagar

Bengaluru

Overview

BioDiscovery Group is conducting Workshops and eWorkshop since 2010. Till date we have successfully trained participants from several countries who were not only students but scientists, faculties, professor, company executives, etc. Till now we have conducted some great workshops in India as well as other countries please click here for all our upcoming as well as previous workshops and click here for the pictures of previous workshops.

We have launched 3 day training cum workshop Next Generation Sequencing Data Analysis (DNA-Seq, RNA-Seq & Chip-Seq) at our Bangalore office in Bangalore, Karnataka, India.

INTRODUCTION

The completion of the Human Genome Project in 2003 ushered in a new era of rapid, affordable, and accurate genome analysis—called Next Generation Sequencing (NGS). NGS builds upon “first generation sequencing” technologies to yield accurate and cost-effective sequencing results. The biggest advances in genome sequencing have been increasing speed and accuracy, resulting in reduction in manpower and cost. This speed is because of high throughput next generation sequencing.

NGS is characterized by improved accuracy and speed, but also reduced manpower and cost. There has never been a time where it has been as cheap, convenient, or straightforward to sequence a genome. Arguably, the biggest improvement has been the development of parallel analysis, which increased the sequencing speed. This 3-day training course will focus on the use of efficient technologies used in the next generation sequencing data analysis (DNA-Seq, RNA-Seq & Chip-Seq), the first step in a bioinformatics pipeline for analyzing NGS data is usually to align the reads to a reference genome in addition to inferring the genomic start position of the reads, provide additional information such as the mapping quality scores (mapQ), and possibly also indicate which parts of an alignment may be affected.

The program will be conducted for 3 days for which participants have to bring their own laptop and for which the Linux environment will be provided by us so that student can use that for running NGS processes on their laptops. We will provide handouts (soft & hard copy both) along with the software and paper of technology. It will be extensive training program which will make the participants do all the processes on their Computer Systems (hands-on training) with complete learning of Next Generation Sequencing Data Analysis(DNA-Seq, RNA-Seq & Chip-Seq) process. The course will be of great help to students/ researchers/ scientists in learning this latest science and technology.

ONLY 20 SEATS | BRING YOUR LAPTOP HAVING WINDOWS OS WITH FOLLOWING SYSTEM CONFIGURATION

  • Processor – i3 or above.
  • RAM – 8 GB or above. (4 GB will be fine)
  • Hard Disk – 500 GB or above.

TOPICS

  1. Basic Terminologies.
  2. Introduction to file types in NGS.
  3. What is Sequence alignment.
  4. Introduction to Genome Analysis
  5. Database and File Formats in NGS.
  6. NCBI Genomics Library.
  7. NCBI resources used in Next Generation Sequencing.
  8. Introduction to analysis of Next Generation Sequencing Data.
  9. What is the FASTQ format.

PRACTICAL APPLICATION

Hands-on exercises will be performed individually using software tools on your own laptops. No prior software experience is required.

  1. Blasting into SRA.
  2. Checking the quality of Sequence DNA, RNA.
  3. Process Sequence Reads-Quality trimming read joining etc. 
  4. Aligning the sequences (DNA, RNA).
  5. Gene Annotation.
  6. Chip-Seq Sequencing of the reads.
  7. DNA-Seq result Analysis.
  8. RNA-Seq result Analysis.
  9. Chip-Seq Sequencing result analysis

TARGET AUDIENCE | WHO SHOULD ATTEND

Scientists and Scholars with basic knowledge of Life Science and Genomics who would like to receive a comprehensive overview or refresher on the Next Generation Sequencing. Academics: Bachelor/Masters Students, PhD, Research Scholars, Resident Doctors as well a Faculty from Microbiology, Molecular Biology, Biochemistry, Biotechnology, Immunology, Hematology, Pharmacy, Biomedical Technology, Genetics, Genomics, Proteomics, Bioinformatics, Animal & Plant Science and Life Sciences.  Professionals: Scientists from Biotechnology, Bioinformatics and Pharmaceutical industry and regulatory agencies. Hands-on exercises will be performed individually using software tools on your own laptops. (no prior experience required). 

OUTCOME

Participants will

  • Be able to understand the technology behind the sequencing of human genome.
  • Learn to retrieve and check the quality of sequences.
  • Learn aligning the target sequence with reference sequence.
  • Learn sequence analysis.
  • Learn data analysis of our result based on different parameters.
  • Learn the overall concept of Next Generation Sequencing Data Analysis.

T & C

  • Only Windows OS is required for training & software installation.
  • While buying the ticket choose the right category of registration in which you fall, as the category in which you register, you will get certificate of that ONLY.
  • If you register under wrong category then your registration will be invalid and NO REFUND WILL BE MADE IN THIS CASE. This is your mistake and the company is not responsible for it.
  • Once you register we will send you Welcome email 5 days prior to the event. This email will have all detail of files, software, etc.
  • You need to follow the instructions in the welcome email and prepare your system accordingly.
  • If you do not turn up for training session on any day then NO CERTIFICATE WILL BE AWARDED TO YOU.
  • No refund will be made in any case.

BioDiscovery Group, 24th Main Road 1st Phase, JP Nagar

Bengaluru

Bengaluru |3 Day Workshop in NGS Data Analysis DNA-Seq, RNA-Seq & Chip-Seq

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